miRNApath

miRNApath: Pathway Enrichment for miRNA Expression Data

Bioconductor version: Release (2.7)

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Author: James M. Ward with contributions from Yunling Shi, Cindy Richards, John P. Cogswell

Maintainer: James M. Ward

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("miRNApath")    

Documentation

PDF

R Script

miRNApath: Pathway Enrichment for miRNA Expression Data

Reference Manual

Details

biocViews	Annotation, Pathways, Bioinformatics, DifferentialExpression
Depends	methods, R
Imports
Suggests
System Requirements
License	LGPL-2.1
URL
Depends On Me
Imports Me
Suggests Me
Version	1.10.0

Package Downloads

Package Source	miRNApath_1.10.0.tar.gz
Windows Binary	miRNApath_1.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	miRNApath_1.10.0.tgz
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