pcot2

Principal Coordinates and Hotelling's T-Square method

Bioconductor version: Release (2.7)

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author: Sarah Song, Mik Black

Maintainer: Sarah Song

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("pcot2")    

Documentation

PDF		HowToUseGeneLocator.pdf
PDF	R Script	PCOT2 Vignette

Reference Manual

Details

biocViews	Microarray, DifferentialExpression
Depends	R, grDevices, Biobase, amap
Imports
Suggests	multtest, hu6800.db, KEGG.db, mvtnorm
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
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Version	1.18.0

Package Downloads

Package Source	pcot2_1.18.0.tar.gz
Windows Binary	pcot2_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	pcot2_1.18.0.tgz
Package Downloads Report	Download Stats