rGADEM

de novo motif discovery

Bioconductor version: Release (2.7)

rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.

Author: Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li

Maintainer: Arnaud Droit

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("rGADEM")    

Documentation

PDF

R Script

The rGADEM users guide

Reference Manual

Details

biocViews	Microarray, ChIPchip, Sequencing, ChIPSeq, GenomicSequence
Depends	R, Biostrings, IRanges, BSgenome, methods, seqLogo
Imports	Biostrings, IRanges, methods, graphics, seqLogo
Suggests	BSgenome.Hsapiens.UCSC.hg18
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me	MotIV
Suggests Me
Version	1.2.0

Package Downloads

Package Source	rGADEM_1.2.0.tar.gz
Windows Binary	rGADEM_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	rGADEM_1.2.0.tgz
Package Downloads Report	Download Stats