snpMatrix

The snp.matrix and X.snp.matrix classes

Bioconductor version: Release (2.7)

Implements classes and methods for large-scale SNP association studies

Author: David Clayton and Hin-Tak Leung

Maintainer: David Clayton

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("snpMatrix")    

Documentation

PDF	R Script	Imputation and meta-analysis
PDF	R Script	Principal components analysis
PDF		Rill
PDF	R Script	snpMatrix introduction
PDF		snpMatrix-paper-HumanHeridity2007.pdf
PDF	R Script	TDT tests

Reference Manual

Details

biocViews	Microarray, SNP, GeneticVariability
Depends	R, survival, methods
Imports	graphics, grDevices, methods, stats, survival, utils
Suggests	hexbin
System Requirements
License	GPL-3
URL	http://www-gene.cimr.cam.ac.uk/clayton/software/
Depends On Me	GGBase, GGtools
Imports Me
Suggests Me	crlmm
Version	1.14.6

Package Downloads

Package Source	snpMatrix_1.14.6.tar.gz
Windows Binary	snpMatrix_1.14.6.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	snpMatrix_1.14.6.tgz
Package Downloads Report	Download Stats