topGO

topGO: Enrichment analysis for Gene Ontology

Bioconductor version: Release (2.7)

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author: Adrian Alexa, Jorg Rahnenfuhrer

Maintainer: Adrian Alexa

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("topGO")    

Documentation

PDF	R Script	topGO
PDF		topGO_classes_v3.pdf

Reference Manual

Details

biocViews	Microarray, Bioinformatics, Visualization
Depends	R, methods, graph, Biobase, GO.db, AnnotationDbi, SparseM
Imports	methods, graph, Biobase, SparseM, AnnotationDbi, lattice
Suggests	ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest
System Requirements
License	LGPL
URL
Depends On Me	RNAither
Imports Me
Suggests Me	Ringo
Version	2.2.0

Package Downloads

Package Source	topGO_2.2.0.tar.gz
Windows Binary	topGO_2.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	topGO_2.2.0.tgz
Package Downloads Report	Download Stats