GGtools

software and data for genetics of gene expression (c) 2006 VJ Carey

Bioconductor version: Development (2.8)

dealing with hapmap SNP reports, GWAS, etc.

Author: Vince Carey

Maintainer: Vince Carey

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GGtools")    

Documentation

PDF	R Script	external -- decomposable smlSet representation
PDF	R Script	GGtools Bioinfo Application note support
PDF	R Script	GGtools: exploring genetics of gene expression
PDF		lab2010.pdf

Reference Manual

Details

biocViews	SNP, GeneticVariability, Genetics, Bioinformatics
Depends	R, methods, Biobase, GGBase, snpStats, annotate, IRanges, rtracklayer, org.Hs.eg.db, GenomicRanges, ff
Imports	AnnotationDbi, IRanges, annaffy, GSEABase, rtracklayer
Suggests	illuminaHumanv1.db, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20100427, rpart, rtracklayer, GSEABase, ceu1kg, ceuhm3, SNPlocs.Hsapiens.dbSNP.20090506, genefilter, hmyriB36
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	3.9.73

Package Downloads

Package Source	GGtools_3.9.73.tar.gz
Windows Binary	GGtools_3.9.72.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GGtools_3.9.72.tgz
Package Downloads Report	Download Stats