MEDIPS

MeDIP-Seq data analysis

Bioconductor version: Development (2.8)

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-Seq). Nevertheless, functionalities like the quality controls may be applied to other types of sequencing data (e.g. ChIP-Seq). MEDIPS adresses several aspects in the context of MeDIP-Seq data analysis.

Author: Lukas Chavez, Joern Dietrich

Maintainer: Lukas Chavez

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("MEDIPS")    

Documentation

PDF

R Script

MEDIPS

Reference Manual

Details

biocViews	Sequencing, DNAMethylation, CpGIsland, DifferentialExpression, HighThroughputSequencing, ChIPseq, Preprocessing, QualityControl, Visualization
Depends	R, BSgenome
Imports	Biostrings, BSgenome, graphics, gtools, IRanges, methods, stats, utils
Suggests	BSgenome, BSgenome.Hsapiens.UCSC.hg19
System Requirements
License	GPL (>=2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.1.2

Package Downloads

Package Source	MEDIPS_1.1.2.tar.gz
Windows Binary	MEDIPS_1.1.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	MEDIPS_1.1.2.tgz
Package Downloads Report	Download Stats