SAGx

Statistical Analysis of the GeneChip

Bioconductor version: Development (2.8)

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author: Per Broberg

Maintainer: Per Broberg,

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("SAGx")    

Documentation

PDF

R Script

samroc - example

Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing, DataImport, Bioinformatics, DifferentialExpression, Clustering, MultipleComparisons
Depends	R, stats, multtest, methods
Imports	Biobase
Suggests	KEGG.db, hu6800.db
System Requirements
License	GPL-3
URL	http://home.swipnet.se/pibroberg/expression_hemsida1.html
Depends On Me
Imports Me
Suggests Me
Version	1.25.1

Package Downloads

Package Source	SAGx_1.25.1.tar.gz
Windows Binary	SAGx_1.25.0.zip (32-bit only)
MacOS 10.5 (Leopard) binary	SAGx_1.25.0.tgz
Package Downloads Report	Download Stats