affxparser

Affymetrix File Parsing SDK

Bioconductor version: Development (2.8)

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author: Henrik Bengtsson, James Bullard, Robert Gentleman, Kasper Daniel Hansen, Martin Morgan

Maintainer: Kasper Daniel Hansen

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("affxparser")    

Documentation

Reference Manual

Details

biocViews	Infrastructure, DataImport
Depends	R
Imports
Suggests	R.utils, AffymetrixDataTestFiles
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	ITALICS, Starr, pdInfoBuilder, rMAT
Imports Me	AffyTiling, GeneRegionScan, ITALICS, affyILM, cn.farms, oligo
Suggests Me
Version	1.23.3

Package Downloads

Package Source	affxparser_1.23.3.tar.gz
Windows Binary	affxparser_1.23.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	affxparser_1.23.3.tgz
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