clippda

A package for the clinical proteomic profiling data analysis

Bioconductor version: Development (2.8)

Methods for the nalysis of data from clinical proteomic profiling studies. The focus is on the studies of human subjects, which are often observational case-control by design and have technical replicates. A method for sample size determination for planning these studies is proposed. It incorporates routines for adjusting for the expected heterogeneities and imbalances in the data and the within-sample replicate correlations.

Author: Stephen Nyangoma

Maintainer: Stephen Nyangoma

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("clippda")    

Documentation

PDF

R Script

Sample Size Calculation

Reference Manual

Details

biocViews	Proteomics, OneChannel, DataPreprocessing, Bioinformatics, DifferentialExpression, MultipleComparisons, SampleSize
Depends	R, limma, statmod, scatterplot3d, graphics, grDevices, stats, utils, Biobase, tools, methods
Imports
Suggests
System Requirements
License	GPL (>=2)
URL	http://www.cancerstudies.bham.ac.uk/crctu/CLIPPDA.shtml
Depends On Me
Imports Me
Suggests Me
Version	1.5.0

Package Downloads

Package Source	clippda_1.5.0.tar.gz
Windows Binary	clippda_1.5.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	clippda_1.5.0.tgz
Package Downloads Report	Download Stats