goseq

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: Development (2.8)

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Matthew Young

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("goseq")    

Documentation

PDF

R Script

goseq User's Guide

Reference Manual

Details

biocViews	HighThroughputSequencingData, GO, GeneExpression, Transcription, RNAseq
Depends	R, BiasedUrn, geneLenDataBase
Imports	mgcv, graphics, stats, utils, AnnotationDbi
Suggests	GO.db, edgeR, org.Hs.eg.db
System Requirements
License	LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.3.3

Package Downloads

Package Source	goseq_1.3.3.tar.gz
Windows Binary	goseq_1.3.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	goseq_1.3.2.tgz
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