ibh

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: Development (2.8)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ibh")    

Documentation

PDF

R Script

ibh

Reference Manual

Details

biocViews	QualityControl, DataImport, GraphsAndNetworks, Bioinformatics
Depends	simpIntLists
Imports
Suggests	yeastCC, stats
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
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Version	0.99.0

Package Downloads

Package Source	ibh_0.99.0.tar.gz
Windows Binary	ibh_0.99.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ibh_0.99.0.tgz
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