mdqc

Mahalanobis Distance Quality Control for microarrays

Bioconductor version: Development (2.8)

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Author: Justin Harrington

Maintainer: Gabriela Cohen-Freue

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("mdqc")    

Documentation

PDF

R Script

Introduction to MDQC

Reference Manual

Details

biocViews	Microarray, QualityControl
Depends	R, cluster, MASS
Imports
Suggests
System Requirements
License	LGPL (>= 2)
URL
Depends On Me
Imports Me	arrayMvout
Suggests Me
Version	1.13.1

Package Downloads

Package Source	mdqc_1.13.1.tar.gz
Windows Binary	mdqc_1.13.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	mdqc_1.13.1.tgz
Package Downloads Report	Download Stats