mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Development (2.8)

This package provides functions for fitting MOSAiCS, a statistical framework to analyze one-sample or two-sample ChIP-seq data.

Author: Dongjun Chung, Pei Fen Kuan, Sunduz Keles

Maintainer: Dongjun Chung

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("mosaics")    

Documentation

PDF

R Script

MOSAiCS

Reference Manual

Details

biocViews	ChIPseq, Sequencing, Transcription, Genetics, Bioinformatics
Depends	R, methods, graphics
Imports	MASS, splines, lattice, IRanges
Suggests	mosaicsExample, rtracklayer, cosmo
System Requirements
License	GPL (>= 2)
URL	http://groups.google.com/group/mosaics_user_group
Depends On Me
Imports Me
Suggests Me
Version	0.99.2

Package Downloads

Package Source	mosaics_0.99.2.tar.gz
Windows Binary	mosaics_0.99.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	mosaics_0.99.2.tgz
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