ind1KG

Data from 1000 Genomes, NA19240 (female) chr6 excerpt

Bioconductor version: Development (2.8)

Elements of samtools/bioc workflow for dealing with personal sequence focusing on identification and interpretation of rare variants

Author: VJ Carey

Maintainer: VJ Carey

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ind1KG")    

Documentation

PDF	R Script	ind1KG -- 1000 genomes data demo
PDF	R Script	Notes for eSet developers

Reference Manual

Details

biocViews	Genetics, HighThroughputSequencing
Depends	R, Rsamtools
Imports
Suggests	GenomicFeatures, rtracklayer, org.Hs.eg.db, snpMatrix, SNPlocs.Hsapiens.dbSNP.20080617, lumiHumanIDMapping, GGBase, GGtools, hmyriB36
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	0.1.5

Package Downloads

Package Source	ind1KG_0.1.5.tar.gz
Windows Binary	ind1KG_0.1.5.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ind1KG_0.1.5.tgz
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