ACME

Algorithms for Calculating Microarray Enrichment (ACME)

Bioconductor version: Development (2.8)

ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment". It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.

Author: Sean Davis

Maintainer: Sean Davis

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ACME")    

Documentation

PDF

R Script

ACME

Reference Manual

Details

biocViews	Bioinformatics
Depends	Biobase, methods
Imports	graphics, stats
Suggests
System Requirements
License	GPL (>= 2)
URL	http://watson.nci.nih.gov/~sdavis
Depends On Me
Imports Me
Suggests Me
Version	2.7.0

Package Downloads

Package Source	ACME_2.7.0.tar.gz
Windows Binary	ACME_2.7.0.zip (32-bit only)
MacOS 10.5 (Leopard) binary	ACME_2.7.0.tgz
Package Downloads Report	Download Stats