CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: Development (2.8)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Sjoerd Vosse and Mark van de Wiel

Maintainer: Mark van de Wiel

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("CGHcall")    

Documentation

PDF

R Script

CGHcall

Reference Manual

Details

biocViews	Microarray, DNACopyNumber, Preprocessing, Visualization
Depends	R, impute, DNAcopy, methods, Biobase, CGHbase
Imports
Suggests
System Requirements
License	GPL (http://www.gnu.org/copyleft/gpl.html)
URL
Depends On Me	CGHnormaliter
Imports Me	CGHnormaliter
Suggests Me
Version	2.11.0

Package Downloads

Package Source	CGHcall_2.11.0.tar.gz
Windows Binary	CGHcall_2.11.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	CGHcall_2.11.0.tgz
Package Downloads Report	Download Stats