CNTools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Development (2.8)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("CNTools")    

Documentation

PDF

R Script

NCTools HowTo

Reference Manual

Details

biocViews	Platform, Microarray, CopyNumberVariants
Depends	methods, tools, stats, genefilter
Imports
Suggests
System Requirements
License	LGPL
URL
Depends On Me	cghMCR
Imports Me
Suggests Me
Version	1.7.0

Package Downloads

Package Source	CNTools_1.7.0.tar.gz
Windows Binary	CNTools_1.7.0.zip (32-bit only)
MacOS 10.5 (Leopard) binary	CNTools_1.7.0.tgz
Package Downloads Report	Download Stats