OCplus

Operating characteristics plus sample size and local fdr for microarray experiments

Bioconductor version: Development (2.8)

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Author: Yudi Pawitan and Alexander Ploner

Maintainer: Alexander Ploner

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("OCplus")    

Documentation

PDF

R Script

OCplus Introduction

Reference Manual

Details

biocViews	Microarray, Bioinformatics, DifferentialExpression, MultipleComparisons
Depends	R, akima
Imports	multtest, graphics, grDevices, stats
Suggests
System Requirements
License	LGPL
URL
Depends On Me
Imports Me
Suggests Me
Version	1.25.0

Package Downloads

Package Source	OCplus_1.25.0.tar.gz
Windows Binary	OCplus_1.25.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	OCplus_1.25.0.tgz
Package Downloads Report	Download Stats