RNAinteract

Estimate Pairwise Interactions from multidimensional features

Bioconductor version: Development (2.8)

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Author: Bernd Fischer

Maintainer: Bernd Fischer

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("RNAinteract")    

Documentation

PDF

R Script

RNAinteract

Reference Manual

Details

biocViews	CellBasedAssays, QualityControl, Preprocessing, Visualization
Depends	R, abind, locfit, Biobase
Imports	RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, qvalue, splots
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	0.99.4

Package Downloads

Package Source	RNAinteract_0.99.4.tar.gz
Windows Binary	RNAinteract_0.99.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	RNAinteract_0.99.4.tgz
Package Downloads Report	Download Stats