TDARACNE

Network reverse engineering from time course data.

Bioconductor version: Development (2.8)

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

Author: Zoppoli P.,Morganella S., Ceccarelli M.

Maintainer: Zoppoli Pietro

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("TDARACNE")    

Documentation

PDF

R Script

TDARACNE

Reference Manual

Details

biocViews	Microarray, TimeCourse
Depends	GenKern, Rgraphviz, Biobase
Imports
Suggests
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.4

Package Downloads

Package Source	TDARACNE_1.0.4.tar.gz
Windows Binary	TDARACNE_1.0.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	TDARACNE_1.0.4.tgz
Package Downloads Report	Download Stats