beadarray

Quality assessment and low-level analysis for Illumina BeadArray data

Bioconductor version: Development (2.8)

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie

Maintainer: Mark Dunning

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("beadarray")    

Documentation

PDF	R Script	beadarray.pdf
PDF	R Script	beadlevel.pdf
PDF		beadsummary.pdf
PDF	R Script	ImageProcessing.pdf

Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Preprocessing
Depends	R, Biobase, methods
Imports	BeadDataPackR, limma
Suggests	lumi, vsn, affy, hwriter
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me	arrayQualityMetrics
Suggests Me	beadarraySNP, lumi
Version	2.1.15

Package Downloads

Package Source	beadarray_2.1.15.tar.gz
Windows Binary	beadarray_2.1.15.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	beadarray_2.1.15.tgz
Package Downloads Report	Download Stats