limma

Linear Models for Microarray Data

Bioconductor version: Development (2.8)

Data analysis, linear models and differential expression for microarray data.

Author: Gordon Smyth with contributions from Matthew Ritchie, Jeremy Silver, James Wettenhall, Natalie Thorne, Mette Langaas, Egil Ferkingstad, Marcus Davy, Francois Pepin, Dongseok Choi, Davis McCarthy, Di Wu, Alicia Oshlack, Carolyn de Graaf, Yifang Hu, Wei Shi and Belinda Phipson.

Maintainer: Gordon Smyth

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("limma")    

Documentation

PDF	R Script	Limma Vignette
PDF		usersguide.pdf

Reference Manual

Details

biocViews	Microarray, OneChannel, TwoChannel, DataImport, QualityControl, Preprocessing, Bioinformatics, DifferentialExpression, MultipleComparisons, TimeCourse
Depends	R, methods
Imports
Suggests	affy, MASS, org.Hs.eg.db, splines, statmod, vsn
System Requirements
License	LGPL
URL	http://bioinf.wehi.edu.au/limma
Depends On Me	AffyExpress, Agi4x44PreProcess, AgiMicroRna, CALIB, ChIPpeakAnno, HTqPCR, LVSmiRNA, RMAGEML, RTools4TB, Ringo, TurboNorm, affylmGUI, attract, cghMCR, clippda, coRNAi, codelink, convert, limmaGUI, maDB, maigesPack, marray, nem, oneChannelGUI, qpcrNorm, snapCGH
Imports Me	ArrayExpress, ArrayTools, CALIB, ChIPpeakAnno, HTqPCR, OLIN, PatientGeneSets, RNAinteract, RNAither, Ringo, SSPA, affycoretools, arrayQualityMetrics, arrayQuality, attract, beadarray, betr, edgeR, explorase, iChip, maSigPro, phenoTest, snapCGH, timecourse, vsn
Suggests Me	ABarray, BioNet, BiocCaseStudies, CMA, Category, GEOquery, GSRI, GeneSelector, MLP, PGSEA, beadarraySNP, dyebias, les, lumi, methylumi, oligo, plw, puma, rtracklayer
Version	3.7.27

Package Downloads

Package Source	limma_3.7.27.tar.gz
Windows Binary	limma_3.7.26.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	limma_3.7.26.tgz
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