procoil

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: Development (2.8)

The procoil package allows to predict whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. The predict function not only computes the prediction itself, but also a profile which allows to determine the strengths to which the individual residues are indicative for either class. Profiles can also be plotted and exported to files.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("procoil")    

Documentation

PDF

R Script

PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins

Reference Manual

Details

biocViews	Proteomics, Classification
Depends	R, methods
Imports	methods, stats, graphics, utils
Suggests	Biostrings
System Requirements
License	GPL (>= 2)
URL	http://www.bioinf.jku.at/software/procoil/
Depends On Me
Imports Me
Suggests Me
Version	1.1.2

Package Downloads

Package Source	procoil_1.1.2.tar.gz
Windows Binary	procoil_1.1.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	procoil_1.1.1.tgz
Package Downloads Report	Download Stats