ABarray

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Micorarray (AB1700) gene expression data.

Bioconductor version: Release (2.7)

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ABarray")    

Documentation

PDF	R Script	ABarray gene expression
PDF	R Script	ABarray gene expression GUI interface

Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing
Depends
Imports	Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils
Suggests	limma, LPE
System Requirements
License	GPL
URL
Depends On Me
Imports Me
Suggests Me
Version	1.18.0

Package Downloads

Package Source	ABarray_1.18.0.tar.gz
Windows Binary	ABarray_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ABarray_1.18.0.tgz
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