ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Release (2.7)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ChIPseqR")    

Documentation

PDF

R Script

Introduction to ChIPseqR

Reference Manual

Details

biocViews	ChIPseq, Bioinformatics, Infrastructure
Depends	R, ShortRead, methods
Imports	Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils
Suggests
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.4.0

Package Downloads

Package Source	ChIPseqR_1.4.0.tar.gz
Windows Binary	ChIPseqR_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ChIPseqR_1.4.0.tgz
Package Downloads Report	Download Stats