sigPathway

Pathway Analysis

Bioconductor version: Release (2.7)

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("sigPathway")    

Documentation

PDF

R Script

sigPathway

Reference Manual

Details

biocViews	Bioinformatics, DifferentialExpression, MultipleComparisons
Depends	R
Imports
Suggests	hgu133a.db, XML, AnnotationDbi
System Requirements
License	GPL-2
URL	http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102, http://www.chip.org/~ppark/Supplements/PNAS05.html
Depends On Me
Imports Me
Suggests Me
Version	1.18.0

Package Downloads

Package Source	sigPathway_1.18.0.tar.gz
Windows Binary	sigPathway_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	sigPathway_1.18.0.tgz
Package Downloads Report	Download Stats