snapCGH

Segmentation, normalisation and processing of aCGH data.

Bioconductor version: Release (2.7)

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne

Maintainer: John Marioni

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("snapCGH")    

Documentation

PDF

R Script

Segmentation Overview

Reference Manual

Details

biocViews	Microarray, CopyNumberVariants, TwoChannel, Preprocessing
Depends	limma, DNAcopy, methods
Imports	aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils
Suggests
System Requirements
License	GPL
URL
Depends On Me	ADaCGH2
Imports Me
Suggests Me	beadarraySNP
Version	1.20.0

Package Downloads

Package Source	snapCGH_1.20.0.tar.gz
Windows Binary	snapCGH_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	snapCGH_1.20.0.tgz
Package Downloads Report	Download Stats