spikeLI

Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Bioconductor version: Release (2.7)

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

Author: Delphine Baillon, Paul Leclercq, Sarah Ternisien, Thomas Heim, Enrico Carlon

Maintainer: Enrico Carlon

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("spikeLI")    

Documentation

PDF		collapse_A14.pdf
PDF		Ivsc.pdf
PDF		IvsDG_TagE.pdf
PDF		langmuir2.pdf
PDF	R Script	spikeLI

Reference Manual

Details

biocViews	Microarray, QualityControl
Depends
Imports	graphics, grDevices, stats, utils
Suggests
System Requirements
License	GPL
URL
Depends On Me
Imports Me
Suggests Me
Version	2.10.0

Package Downloads

Package Source	spikeLI_2.10.0.tar.gz
Windows Binary	spikeLI_2.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	spikeLI_2.10.0.tgz
Package Downloads Report	Download Stats