RpsiXML

R interface to PSI-MI 2.5 files

Bioconductor version: 2.6

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

Author: Jitao David Zhang, Stefan Wiemann, Marc Carlson, with contributions from Tony Chiang

Maintainer: Jitao David Zhang <j.zhang at dkfz.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RpsiXML")

To cite this package in a publication, start R and enter:

    citation("RpsiXML")

Documentation

PDF	R Script	Application Examples of RpsiXML package
PDF	R Script	Reading PSI-25 XML files
PDF		Reference Manual

Details

biocViews	Infrastructure, Proteomics
Depends	methods, annotate(>= 1.21.0), graph(>= 1.21.0), Biobase, RBGL(>= 1.17.0), XML (>= 2.4.0), hypergraph(>= 1.15.2), AnnotationDbi
Imports
Suggests	org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db, org.Sc.sgd.db, hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db, hom.Rn.inp.db, hom.Sc.inp.db, Rgraphviz, ppiStats
System Requirements
License	LGPL-3
URL	http://www.bioconductor.org
Depends On Me	ScISI
Imports Me	ScISI
Suggests Me
Version	1.8.0
Since	Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source	RpsiXML_1.8.0.tar.gz
Windows Binary	RpsiXML_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	RpsiXML_1.8.0.tgz
Package Downloads Report	Download Stats

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