affypdnn

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Bioconductor version: 2.6

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affypdnn")

To cite this package in a publication, start R and enter:

    citation("affypdnn")

Documentation

PDF	R Script	affypdnn
PDF		Reference Manual

Details

biocViews	OneChannel, Microarray, Preprocessing
Depends	R (>= 2.3.0), affy(>= 1.5)
Imports
Suggests	affydata, hgu95av2probe
System Requirements
License	LGPL
URL
Depends On Me
Imports Me
Suggests Me
Version	1.22.0
Since	Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source	affypdnn_1.22.0.tar.gz
Windows Binary	affypdnn_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	affypdnn_1.22.0.tgz
Package Downloads Report	Download Stats

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