genefilter

genefilter: methods for filtering genes from microarray experiments

Bioconductor version: 2.6

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefilter")

To cite this package in a publication, start R and enter:

    citation("genefilter")

PDF	R Script	Diagnostic plots for independent filtering
PDF	R Script	How to find genes whose expression profile is similar to that of specified genes
PDF	R Script	Using the genefilter function to filter genes from a microarray dataset
PDF		Reference Manual

biocViews	Bioinformatics, Microarray
Depends
Imports	AnnotationDbi, annotate(>= 1.13.7), Biobase(>= 1.99.10), graphics, methods, stats, survival
Suggests	Biobase(>= 1.99.10), class, hgu95av2.db, methods, tkWidgets
System Requirements
License	Artistic-2.0
URL
Depends On Me	affyQCReport, Agi4x44PreProcess, cellHTS, cellHTS2, CNTools, eisa, exonmap, GeneMeta, MLInterfaces, simpleaffy
Imports Me	affycoretools, arrayQualityMetrics, Category, crlmm, DESeq, factDesign, GSRI, Ringo, simpleaffy, tilingArray, XDE
Suggests Me	AffyExpress, annotate, ArrayTools, BiocCaseStudies, Category, clusterStab, codelink, estrogen, GOstats, GSEAlm, logicFS, lumi, MAQCsubset, MCRestimate, oligo, oneChannelGUI, qpgraph, rtracklayer, siggenes, SNPchip, topGO, VanillaICE, XDE
Version	1.30.0
Since	Bioconductor 1.6 (R-2.1) or earlier

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