oligoClasses

Classes for high-throughput arrays supported by oligo

Bioconductor version: 2.6

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Author: Benilton Carvalho <carvalho at bclab.org> and Robert Scharpf <rscharpf at jhsph.edu>

Maintainer: Benilton Carvalho <carvalho at bclab.org> and Robert Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("oligoClasses")

To cite this package in a publication, start R and enter:

    citation("oligoClasses")

PDF	R Script	oligoClasses Vignette
PDF		Reference Manual

biocViews	Infrastructure
Depends	Biobase(>= 2.7.3), methods
Imports	graphics, Biostrings(>= 2.15.11), affyio(>= 1.15.2)
Suggests	pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm, genomewidesnp5Crlmm
System Requirements
License	GPL (>= 2)
URL
Depends On Me	crlmm, mBPCR, oligo, pd.081229.hg18.promoter.medip.hx1, pd.2006.07.18.hg18.refseq.promoter, pd.2006.07.18.mm8.refseq.promoter, pd.2006.10.31.rn34.refseq.promoter, pd.charm.hg18.example, pd.cytogenetics.array, pd.feinberg.hg18.me.hx1, pd.feinberg.mm8.me.hx1, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.hg.u95a, pd.hg.u95av2, pd.hg18.60mer.expr, pd.ht.hg.u133.plus.pm, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.hugene.1.1.st.v1, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.mogene.1.1.st.v1, pd.mouse430.2, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, pd.ragene.1.1.st.v1, SNPchip, VanillaICE
Imports Me	SNPchip
Suggests Me
Version	1.10.0
Since	Bioconductor 2.1 (R-2.6)