\name{tilingProbes} \alias{tilingProbes} \alias{tilingIRanges} \title{ Create tiling probes or ranges } \description{ Create tiling probes or ranges } \usage{ tilingProbes(width, step, template_seq) tilingIRanges(width, step, from, to) } %- maybe also 'usage' for other objects documented here. \arguments{ \item{from}{ start position for the tiling} \item{step}{ increment in the starting index between one probe and the next. } \item{template_seq}{ template sequence from which tiling probes are to be extracted } \item{to}{ end position for the tiling } \item{width}{ width for the probes } } %\details{ % ~~ If necessary, more details than the description above ~~ %} \value{ \code{tilingProbes} and \code{tilingIRanges} return a \code{\link[Biostrings:XStringSet-class]{DNAStringSet}} and a \code{\link[IRanges:IRanges-class]{IRanges}} respectively. } %\references{ ~put references to the literature/web site here ~ } %\author{ ~~who you are~~ } %\note{ ~~further notes~~ % % ~Make other sections like Warning with \section{Warning }{....} ~ %} %\seealso{ ~~objects to See Also as \code{\link{help}}, ~~~ } \examples{ dna <- randomDNASequences(1, 30)[[1]] tip <- tilingProbes(10, 2, dna) # ASCII-art cat(as.character(dna), "\n") for (i in 1:length(tip)) { cat(paste(rep("|", (i-1)*2), collapse=""), as.character(tip[[i]]), "\n", sep="") } cat(as.character(dna), "\n") } % Add one or more standard keywords, see file 'KEYWORDS' in the % R documentation directory. \keyword{ manip }