Package: SpaceTrooper
Type: Package
Title: SpaceTrooper performs Quality Control analysis of Image-Based
        spatial
Version: 1.0.0
Authors@R: 
        c(person("Dario", "Righelli",
            email="dario.righelli@gmail.com",
            role=c("aut", "cre"),
            comment=c(ORCID="0000-0003-1504-3583")),
        person(given="Benedetta", family="Banzi", role="aut"),
        person(given="Oriana", family="Romano", role="ctb"),
        person(given="Matteo", family="Merchionni", role="ctb"),
        person(given="Mattia", family="Forcato", role="ctb"),
        person(given="Silvio", family="Bicciato", role="aut"),
        person(given="Davide", family="Risso", role="ctb"))
Description: SpaceTrooper performs Quality Control analysis using data
        driven GLM models of Image-Based spatial data, providing
        exploration plots, QC metrics computation, outlier detection.
        It implements a GLM strategy for the detection of low quality
        cells in imaging-based spatial data (Transcriptomics and
        Proteomics). It additionally implements several plots for the
        visualization of imaging based polygons through the ggplot2
        package.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.4.0), SpatialExperiment
Imports: DropletUtils, S4Vectors, SummarizedExperiment, arrow,
        data.table, dplyr, e1071, ggplot2, ggpubr, robustbase, scater,
        scuttle, sf, sfheaders, cowplot, glmnet, rhdf5, methods, rlang,
        SpatialExperimentIO
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), withr,
        viridis
biocViews: Software, Transcriptomics, GeneExpression, QualityControl,
        Spatial, SingleCell, DataImport, ImmunoOncology
RoxygenNote: 7.3.3
VignetteBuilder: knitr
BugReports: https://github.com/drighelli/SpaceTrooper/issues
URL: https://github.com/drighelli/SpaceTrooper
Config/testthat/edition: 3
Config/pak/sysreqs: libabsl-dev libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev make libharfbuzz-dev libmagick++-dev gsfonts
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libwebp-dev
        libssl-dev libproj-dev libsqlite3-dev libudunits2-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:37:03 UTC
RemoteUrl: https://github.com/bioc/SpaceTrooper
RemoteRef: RELEASE_3_22
RemoteSha: 88c0696e904b636a58d1535206cf3814668de361
NeedsCompilation: no
Packaged: 2025-11-11 17:49:46 UTC; root
Author: Dario Righelli [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1504-3583>),
  Benedetta Banzi [aut],
  Oriana Romano [ctb],
  Matteo Merchionni [ctb],
  Mattia Forcato [ctb],
  Silvio Bicciato [aut],
  Davide Risso [ctb]
Maintainer: Dario Righelli <dario.righelli@gmail.com>
Built: R 4.5.2; ; 2025-11-12 03:10:10 UTC; windows
