Package: VCFArray
Title: Representing on-disk / remote VCF files as array-like objects
Version: 1.26.0
Authors@R: c(
    person("Qian", "Liu", email = "qliu7@buffalo.edu", role = c("aut", "cre")),	
    person("Martin", "Morgan", role = "aut"))	       
Description: VCFArray extends the DelayedArray to represent VCF data
        entries as array-like objects with on-disk / remote VCF file as
        backend. Data entries from VCF files, including info fields,
        FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER)
        could be converted into VCFArray instances with different
        dimensions.
biocViews: Infrastructure, DataRepresentation, Sequencing,
        VariantAnnotation
Depends: R (>= 3.6), methods, BiocGenerics, DelayedArray (>= 0.7.28)
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Liubuntu/VCFArray
BugReports: https://github.com/Liubuntu/VCFArray/issues
Imports: tools, GenomicRanges, VariantAnnotation (>= 1.29.3),
        GenomicFiles (>= 1.17.3), S4Vectors (>= 0.19.19), Rsamtools
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Suggests: SeqArray, BiocStyle, BiocManager, testthat, knitr, rmarkdown
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:49:16 UTC
RemoteUrl: https://github.com/bioc/VCFArray
RemoteRef: RELEASE_3_22
RemoteSha: 830be92cd59e3283accbea8c82e6cc6a8b926272
NeedsCompilation: no
Packaged: 2025-11-13 07:41:49 UTC; root
Author: Qian Liu [aut, cre],
  Martin Morgan [aut]
Maintainer: Qian Liu <qliu7@buffalo.edu>
Built: R 4.5.2; ; 2025-11-13 07:44:07 UTC; windows
