Package: clusterProfiler
Type: Package
Title: A universal enrichment tool for interpreting omics data
Version: 4.18.4
Authors@R: c(
    person(given = "Guangchuang", family = "Yu",        email = "guangchuangyu@gmail.com",   role  = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
    person(given = "Li-Gen",      family = "Wang",      email = "reeganwang020@gmail.com",   role  = "ctb"),
    person(given = "Xiao",        family = "Luo",       email = "l77880853349@163.com",      role  = "ctb"),
    person(given = "Meijun",      family = "Chen",      email = "mjchen1996@outlook.com",    role  = "ctb"),
    person(given = "Giovanni",    family = "Dall'Olio", email = "giovanni.dallolio@upf.edu", role = "ctb"),
    person(given = "Wanqian",     family = "Wei",       email = "altair_wei@outlook.com",    role = "ctb"),
    person(given = "Chun-Hui",    family = "Gao",       email = "gaospecial@gmail.com",      role = "ctb", comment = c(ORCID = "0000-0002-1445-7939"))
	)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package supports functional characteristics of both
        coding and non-coding genomics data for thousands of species
        with up-to-date gene annotation. It provides a universal
        interface for gene functional annotation from a variety of
        sources and thus can be applied in diverse scenarios. It
        provides a tidy interface to access, manipulate, and visualize
        enrichment results to help users achieve efficient data
        interpretation. Datasets obtained from multiple treatments and
        time points can be analyzed and compared in a single run,
        easily revealing functional consensus and differences among
        distinct gene clusters.
Depends: R (>= 4.2.0)
Imports: AnnotationDbi, DOSE (>= 3.23.2), dplyr, enrichplot (>= 1.9.3),
        GO.db, GOSemSim (>= 2.27.2), gson (>= 0.0.7), httr, igraph,
        magrittr, methods, plyr, qvalue, rlang, stats, tidyr, utils,
        yulab.utils (>= 0.2.3)
Suggests: AnnotationHub, BiocManager, jsonlite, readr, org.Hs.eg.db,
        quarto, testthat
VignetteBuilder: quarto
ByteCompile: true
License: Artistic-2.0
URL: https://yulab-smu.top/contribution-knowledge-mining/
BugReports: https://github.com/YuLab-SMU/clusterProfiler/issues
Packaged: 2025-12-16 12:05:24 UTC; root
biocViews: Annotation, Clustering, GeneSetEnrichment, GO, KEGG,
        MultipleComparison, Pathways, Reactome, Visualization
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-12-15 07:40:32 UTC
RemoteUrl: https://github.com/bioc/clusterProfiler
RemoteRef: RELEASE_3_22
RemoteSha: 16e65173cf2f1096f58d3b6156348833f7f75329
NeedsCompilation: no
Author: Guangchuang Yu [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6485-8781>),
  Li-Gen Wang [ctb],
  Xiao Luo [ctb],
  Meijun Chen [ctb],
  Giovanni Dall'Olio [ctb],
  Wanqian Wei [ctb],
  Chun-Hui Gao [ctb] (ORCID: <https://orcid.org/0000-0002-1445-7939>)
Built: R 4.5.2; ; 2025-12-16 12:08:15 UTC; windows
