Mass Spectrometry Data on ExperimentHub

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Documentation for package ‘MsDataHub’ version 1.11.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

20171016_POOL_POS_1_105-134.mzML	AB Sciex LC-MS data files
20171016_POOL_POS_3_105-134.mzML	AB Sciex LC-MS data files
Ai2025	Ai et al (2025) single-cell data
Ai2025_aCMs_report.tsv	Ai et al (2025) single-cell data
Ai2025_iCMs_report.tsv	Ai et al (2025) single-cell data
benchmarkingDIA	DIA benchmarking data
benchmarkingDIA.tsv	DIA benchmarking data
cdf	MS data in CDF format
CEMS	CE-MS data files
CEMS_10ppm.mzML	CE-MS data files
CEMS_25ppm.mzML	CE-MS data files
contaminatants	Contaminant and cRAP databases
cptac	CPTAC label-free data
cptac_a_b_c_peptides.txt	CPTAC label-free data
cptac_a_b_peptides.txt	CPTAC label-free data
cptac_peptides.txt	CPTAC label-free data
cRAP	Contaminant and cRAP databases
crap	Contaminant and cRAP databases
crap_ccp.fasta	Contaminant and cRAP databases
crap_gpm.fasta	Contaminant and cRAP databases
crap_maxquant.fasta.gz	Contaminant and cRAP databases
FTICR	FTICR-MS data files
HAM004_641fE_14.11.07..Exp1.extracted.mzML	FTICR-MS data files
HAM004_641fE_14.11.07..Exp2.extracted.mzML	FTICR-MS data files
HAM004_641fE_14.11.07..Exp3.extracted.mzML	FTICR-MS data files
HAM004_641fE_14.11.07..Exp4.extracted.mzML	FTICR-MS data files
HAM004_641fE_14.11.07..Exp5.extracted.mzML	FTICR-MS data files
HAM005_641fE_14.11.07..Exp1.extracted.mzML	FTICR-MS data files
HAM005_641fE_14.11.07..Exp2.extracted.mzML	FTICR-MS data files
HAM005_641fE_14.11.07..Exp3.extracted.mzML	FTICR-MS data files
HAM005_641fE_14.11.07..Exp4.extracted.mzML	FTICR-MS data files
HAM005_641fE_14.11.07..Exp5.extracted.mzML	FTICR-MS data files
ko15.CDF	MS data in CDF format
MRM	Multiple Reaction Monitoring mode (MRM) test files
MRM.standmix.5.mzML	Multiple Reaction Monitoring mode (MRM) test files
MsDataHub	All MsDataHub datasets
PestMix1_DDA.mzML	Triple TOF SWATH Data
PestMix1_SWATH.mzML	Triple TOF SWATH Data
PXD000001	PXD000001 Proteomics Data
Report.Derks2022.plexDIA	Derks 2022 plexDIA data
Report.Derks2022.plexDIA.tsv	Derks 2022 plexDIA data
sciex	AB Sciex LC-MS data files
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzid	PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML.gz	PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.20141210.mzid	PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.20141210.mzML.gz	PXD000001 Proteomics Data
TripleTOF	Triple TOF SWATH Data
X20171016_POOL_POS_1_105.134.mzML	AB Sciex LC-MS data files
X20171016_POOL_POS_3_105.134.mzML	AB Sciex LC-MS data files