Package: diffUTR
Type: Package
Title: diffUTR: Streamlining differential exon and 3' UTR usage
Version: 1.19.0
Depends: R (>= 4.0)
Authors@R: c(
	person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", 
	  role=c("cre","aut"), comment = c(ORCID = "0000-0003-3418-4218")), 
	person("Stefan", "Gerber", email="gerberst@student.ethz.ch", role="aut") )
Description: The diffUTR package provides a uniform interface and
        plotting functions for limma/edgeR/DEXSeq -powered differential
        bin/exon usage. It includes in addition an improved version of
        the limma::diffSplice method. Most importantly, diffUTR further
        extends the application of these frameworks to differential UTR
        usage analysis using poly-A site databases.
Imports: S4Vectors, SummarizedExperiment, limma, edgeR, DEXSeq,
        GenomicRanges, Rsubread, ggplot2, rtracklayer, ComplexHeatmap,
        ggrepel, stringi, methods, stats, GenomeInfoDb, dplyr,
        matrixStats, IRanges, ensembldb, viridisLite
Suggests: BiocStyle, knitr, rmarkdown
biocViews: GeneExpression
BugReports: https://github.com/ETHZ-INS/diffUTR
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.1.2
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev perl xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:09:14 UTC
RemoteUrl: https://github.com/bioc/diffUTR
RemoteRef: HEAD
RemoteSha: 2f86b3005a9312c03231861ff5484f57844954a2
NeedsCompilation: no
Packaged: 2026-01-09 21:14:17 UTC; root
Author: Pierre-Luc Germain [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>),
  Stefan Gerber [aut]
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>
Built: R 4.6.0; ; 2026-01-09 21:18:16 UTC; windows
