3d14fd3bea02d91daeb0759ff51ba4bc *DESCRIPTION
6756bdd16eb44d48b25923854dabb8f6 *LICENSE
51f811614c7b4e0cbb27e888722bc11e *NAMESPACE
df31467f3b80fbdbc8943eb87cb472ff *R/annotation_utils.R
57d38de6926c8524e33acdcb978d9c21 *R/beta_summary.R
3607c67061b9b5c59acdff09797074e8 *R/blast_utils.R
c39da0cfba45dec3b3119489178095d2 *R/clustirr.R
93423695cdf468e528900782fae2a5d9 *R/community.R
f933dd63058189ad87ab087a1664b55e *R/community_cosine_sim.R
93f731ac92b787d9145108a6b31b0d51 *R/community_decoder.R
3f2545830d1fe857853a734381525ead *R/community_honeycomb.R
9a12a008c344488635bf9187b23fdace *R/community_motif.R
d94220172ffc1fcc1501d92bab9eb172 *R/community_purity.R
7008077704150be6aaf9c827638a71ce *R/dco.R
01c67077c3879760a3638b70f7498463 *R/general_utils.R
927245ff1a7bda4568b49d7a5e85e036 *R/graph.R
94acf0cdddbd94f62b9936db4d22ce28 *R/graph_utils.R
b8dcd8edbcd0b41a48a876740729d348 *R/input_check.R
457739c069d3d4847caaff62716c2b72 *R/node_ag.R
946a892bc7c72874074c8a8d30ac6826 *R/nrads.R
b3cfb5205602bd5432a21f63f1ce7d65 *R/stanmodels.R
d800ef84ab0ac1234727692fbb64e7c0 *README.md
eb0c5031f7ffdc0036a833a2c1e22e86 *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
3dba7dec2e30e166b8fd8b191ad81c2e *data/CDR3ab.RData
63ee7bf570015a13b03920859f7e4e42 *data/D1.RData
b7717bfa4b0169389cc07bc63dad6536 *data/D2.RData
f8bd5f218f1fe7c4ceab9e5c88e300dc *data/datalist
780bdd8fb27d72ed2db4c95b8b2824a8 *data/mcpas.RData
02920aa0aac515d45ffc27b1f1491098 *data/tcr3d.RData
0a56a42c15368d7016ff9d1a9d2f0f83 *data/vdjdb.RData
817e9aa008865aed357ec18afc352a31 *inst/NEWS
e1e46aa56f69d7e8ea8320f1d90dd5ac *inst/doc/User_manual_groups.R
d37322bd9ab7ec06343ce18d1592fcae *inst/doc/User_manual_groups.Rmd
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855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
81a12bda264c72db2f86af3168241246 *inst/script/get_BLOSUM62.R
5a0e2c9166154bdd935445b618d0fc3b *inst/script/get_data.R
12693112de6e32774e404464e3ffdce1 *inst/script/get_mcpastcr.R
3dadbce4beeb328d1ac15edd9beca83d *inst/script/get_tcr3d.R
f57ee7f854bbb095dd2c6de11ef640a8 *inst/script/get_vdjdb.R
c29bff0543af6f0d7926a580003ee390 *inst/stan/dm.stan
1c3df2560af656abaab8fd089d2c35d8 *inst/stan/dmh.stan
c0ffc42be85f4385721be82e61944476 *inst/stan/include/license.stan
dfd24ad3ce1442c12eb66f11dca575cf *man/BLOSUM62.Rd
cf660608f67b93f3e7972a558cd9818e *man/CDR3ab.Rd
6d496f47ecd2bca5ecbf496fc20b9dea *man/clust_irr-class.Rd
0fcbc255a7badcde71a4f220f74008c2 *man/clustirr.Rd
b39f5256c7495311048fdb1fca8b1f1e *man/dco.Rd
f8903265c4dbd3be657d93f502749299 *man/decode_all_communities.Rd
587484a3e7317295650bc3831f3fbf16 *man/decode_community.Rd
b578da4ea5fd7978ee5b880b98c54842 *man/detect_communities.Rd
a9bb7f97e12d4ed9d9e46e7907050128 *man/get_ag_gene_hits.Rd
065e07e964c409b89e15027d71c20700 *man/get_ag_species_hits.Rd
e0b4edd2394f3ab26fe249f83a8c4eaf *man/get_beta_cprob_ag.Rd
a8117ee9ad9ddfc8c52e8add58bcf367 *man/get_beta_violin_ag.Rd
423e775892d20f298ffced27c93196b1 *man/get_cdr3_motifs.Rd
d0552c3d1fc865cf1fa31534b3986b73 *man/get_community_feature_purity.Rd
3450c3f9fc5d672fe5650faa1265de8d *man/get_community_feature_stats.Rd
23f2c8e77018afe3bbb3064e67ed325b *man/get_cosine_similarity.Rd
0d2168c1a0e6c8a346fd2cc6c1886659 *man/get_honeycombs.Rd
d6b0a0d9b9a0cbe802d808d4f2db5872 *man/get_nrads.Rd
981fdfc94a4e928788e997902561be15 *man/mcpas.Rd
f0f49598bd2ceee907b22120a5dda111 *man/plot_graph.Rd
6a9e228ac10fa35c8e6f8e9f60450ed0 *man/save_interactive_graph.Rd
a88d60bd86c5aa58398d9673430d7f82 *man/tcr3d.Rd
dc61a7e1ea276382cae40a7724566123 *man/vdjdb.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
4cc2e81e42a31bc19686f08bf823af33 *src/RcppExports.cpp
7ad30b2dcb1bcee88a926aaef0578920 *src/stanExports_dm.cc
e3dc63e5b6f4fe1a8eea88ac1084a736 *src/stanExports_dm.h
85d069fe22fb075b6c2c451bb370b641 *src/stanExports_dmh.cc
d8d3335f2db7a225c95b89db09ae14c1 *src/stanExports_dmh.h
007da2ed32ab71344582e00b0ac6d8c3 *tests/testthat.R
9009b853a81dc7227f11863414f0f8ac *tests/testthat/test-cdr3_na.R
def6528ed69d4b5d702ebb5f0a795657 *tests/testthat/test-get_blosum.R
037eefadf45bd8b97baacb5d4f499217 *tests/testthat/test-multi-chain-clustering.R
4605b7608ee5c9a7858c723410b39735 *tests/testthat/test-s.R
eecb50cb9527e4102e1145b3ed757fc0 *tests/testthat/test-save_interactive_graph.R
d37322bd9ab7ec06343ce18d1592fcae *vignettes/User_manual_groups.Rmd
934a93d1b96993235ccb0b1eb37c59d4 *vignettes/User_manual_introduction.Rmd
