3c0da03cb45c15615b93dd95aa3eec7e *DESCRIPTION
582eeed044ed6c56d71215ffe07eafa3 *LICENSE
836ea128038beb0a1a85499d6106a9c6 *NAMESPACE
6f15456c5eff12139c3f0110f4a2ad5b *NEWS.md
cdcc00eef1f81e6239bf43573b4ab365 *R/CreateCrcBiomeScreenObject.R
e4377838bd6c09b9b2784e69134d69f9 *R/CreateFromTSE.R
699e82cd4ebabfe2e9602a9ec3eb3ca3 *R/EvaluateCrcBiomeScreen.R
7908b37709d1a6ae78bdb9d40b6836dc *R/EvaluateModel.R
dec1c959a7276eaa8669e8d7d4c3deaf *R/FilterDataset.R
20035a342a7eed7ddebc3a6a5a62c777 *R/GlobalVariables.R
2172460c43d61aa93169a334ec00f690 *R/KeepTaxonomicLevel.R
ae4e5651f54c0336ab0edc23109ca2f3 *R/LoadTaxaTable.R
c5578f97d86ee0445cf53e2cd28b1578 *R/ModelingRF.R
122b2de209d78691afef9c302c34d5d7 *R/ModelingRF_noweights.R
7210856bae460e7092417c25f3034881 *R/ModelingXGBoost.R
51800009253cb3057e9e7ea101cacc63 *R/ModelingXGBoost_noweights.R
a11d716d67c4492339b8c1d8936d6284 *R/NHSBCSP_screeningData.R
e48766c7599028a27def78d636a6c314 *R/NormalizeData.R
2bbf02dce338f6e612ac1c3e4d6ed4df *R/PredictCrcBiomeScreen.R
c652cbf3ac35a67a838a613aa6b3dd18 *R/RunScreening.R
d2fb8e8964371ccf0e12dc371fe82e2a *R/SplitDataSet.R
0a599dce9b77b11d8886fad2d7adf189 *R/SplitTaxas.R
817070f399174c45f84ec9af7222fe89 *R/Thomas_2018_RelativeAbundance.R
f443c0d4a2b7bc240189ddbce3431586 *R/TrainModels.R
1b19c5d9d0b49320dd11ae0e04c90ce2 *R/ValidateModelOnData.R
6d0be13550040d3bf414fb0e87c8395a *R/ZellerG_2014_RelativeAbundance.R
8c3b8ba052707a7869c988f200550409 *R/checkClassBalance.R
e4231b3da7dfcd7278c40745e95d5d37 *R/qcByCmdscale.R
0b3fcf07614891975e1a814d83232470 *README.md
25dafd4f121c2b0f3e4cf2a74a34d0b6 *build/vignette.rds
2c1b7259de5ba3469871751a3ad898c3 *data/NHSBCSP_screeningData.RData
6ee36288646ba005fbdff3c965d1d98f *data/Thomas_2018_RelativeAbundance.RData
e6c0720dbcbee742e86e18524fbc69ca *data/ZellerG_2014_RelativeAbundance.RData
2df7988e91c46c6843417874c3f68104 *data/datalist
2a5a76139f5fb13009e55b26667a2cbb *inst/doc/CrcBiomeScreen.R
a5121d6932cc8b0b64c7208f47a1b722 *inst/doc/CrcBiomeScreen.Rmd
1264b0020dd20568635d146bce10f48c *inst/doc/CrcBiomeScreen.html
18acaf0c2620cc989617202ddda98aea *man/CrcBiomeScreen-class.Rd
32fa2ace9ecbc4d268b09ee5f36241d5 *man/CreateCrcBiomeScreenObject.Rd
bc7e7c850f9c2c025da44b0d98e98a8c *man/CreateCrcBiomeScreenObjectFromTSE.Rd
11e5b1981beb188788fc27fa5112c2b0 *man/EvaluateCrcBiomeScreen.Rd
02e99b8556a5c17013cd42793e7ac630 *man/EvaluateModel.Rd
336b16608aa80449b772a9e405671e44 *man/EvaluateRF.Rd
77c840f8cd2c2b734c58319094b2a248 *man/EvaluateXGBoost.Rd
3492225d54ceaf4a65017bacd72cab5a *man/FilterDataSet.Rd
8c4ec0b4ff68258ea410f607812976a9 *man/KeepTaxonomicLevel.Rd
23e4fb6cde1707057de8e2ae1f8a5eb7 *man/LoadTaxaTable.Rd
660af51177eb49440ff97911fce583e7 *man/ModelingRF.Rd
1c7a7b820b2e4cfa83d894a994a31281 *man/ModelingRF_noweights.Rd
cbb2eac139f526e80a7bcb223880b46f *man/ModelingXGBoost.Rd
99b396b98398034060a4cde483a40b2b *man/ModelingXGBoost_noweights.Rd
adaf5601bc46fdf4e97be89d0d795097 *man/NHSBCSP_screeningData.Rd
bbcf5f91b76ab7deccddee12ffc99c05 *man/NormalizeData.Rd
7d0610c8056030ccf28823c800b02bad *man/PredictCrcBiomeScreen.Rd
cfcee9928de83cbfb6c3350e80551832 *man/RunScreening.Rd
55084d0bf9874014b133f33d45948dd7 *man/SplitDataSet.Rd
addc72a271ceaafe547684473806e46c *man/SplitTaxas.Rd
9cb7e93bd6dd4fba956a01abeab593d5 *man/Thomas_2018_RelativeAbundance.Rd
3a4bd2ea8bce054f6597f85a88a16079 *man/TrainModels.Rd
ed60de2aa4c27db5bf38fbdd23d794cf *man/ValidateModelOnData.Rd
159826833b0b49e0c2ae869cf3f4a637 *man/ZellerG_2014_RelativeAbundance.Rd
7293cb70b8f78b607138589ff7097a3f *man/checkClassBalance.Rd
4eec8c41d46bdf17a442d68b723225e4 *man/getAbsoluteAbundance.Rd
03b83fa88ecdbc6e29ba3f3c12e79af3 *man/getModelData.Rd
66f4880e6fa3cfea882e1429575c2758 *man/getModelResult.Rd
df527aacbc79f394be46a7376f30d46f *man/getNormalizedData.Rd
41f42a6c75e540e479a7f86b8818dcc8 *man/getOutlierSamples.Rd
203d5ccd13e94434c79d86b954fcee32 *man/getPredictResult.Rd
5c480d9ea541514784e48839dd2a93fc *man/getRelativeAbundance.Rd
7b5478993985138af997da2926ab55ab *man/getSampleData.Rd
61bd7a902eec97595a0f9d88d6411876 *man/getTaxaData.Rd
1d4ef1f912bcf9b0519a0625e9ba3815 *man/getTaxaLevelData.Rd
71e59d02c395b64f6b9a8fb312617d52 *man/qcByCmdscale.Rd
4a54cf667db57f511bc6f041ebea6c97 *man/setNormalizedData-setter.Rd
acf093c89bf581b0053d62594c5a7e3c *man/setTaxaData-setter.Rd
5f104c0094b7908a763835aeeabf1929 *tests/testthat.R
f05c4a396d4c606fc9c850bf4cf7bd29 *tests/testthat/test-CreateCrcBiomeScreenObject.R
4fc1d18aed154dbb35c53a46f029f866 *tests/testthat/test-KeepTaxonomicLevel.R
f57b7497214c54ae900925092d949e96 *tests/testthat/test-NormalizeData.R
ac41faa33ce56416ae91a3bfdaff3d26 *tests/testthat/test-SplitDataSet.R
ea08bd957ca1a282d368f8e84cbb3c4a *tests/testthat/test-SplitTaxas.R
b4d0f5e1950e0d82ffa0ea1de3d1e883 *tests/testthat/test-checkClassBalance.R
d7df3f12eedda8a48bb1620a3e6fb9bb *tests/testthat/test-qcByCmdscale.R
a5121d6932cc8b0b64c7208f47a1b722 *vignettes/CrcBiomeScreen.Rmd
