Package: DNAcycP2
Title: DNA Cyclizability Prediction
Version: 1.5.1
Authors@R: c(
    person("Brody", "Kendall",
           email = "curtiskendall2025@u.northwestern.edu",
           role = "aut"),
    person("Keren", "Li",
           email = "kli@uab.edu",
           role = "aut"),
    person("Ji-Ping", "Wang",
           email = "jzwang@northwestern.edu",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8398-939X")))
Description: This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.  
Depends: R (>= 4.4.0)
Imports: basilisk, reticulate
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
StagedInstall: yes
biocViews: NeuralNetwork, StructuralPrediction
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle,
        Biostrings
URL: https://github.com/jipingw/DNAcycP2
BugReports: https://github.com/jipingw/DNAcycP2
git_url: https://git.bioconductor.org/packages/DNAcycP2
git_branch: devel
git_last_commit: 16bab4b
git_last_commit_date: 2026-05-02
Repository: Bioconductor 3.24
Date/Publication: 2026-05-03
NeedsCompilation: no
Packaged: 2026-05-03 21:27:16 UTC; biocbuild
Author: Brody Kendall [aut],
  Keren Li [aut],
  Ji-Ping Wang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8398-939X>)
Maintainer: Ji-Ping Wang <jzwang@northwestern.edu>
