737501307711a3dc63d3dbe7aedaf023 *DESCRIPTION
ceab5163905654a229aff963c5cd7d29 *LICENSE
35140fa1a730ebf355781b62d8c0b969 *NAMESPACE
e62c7a50e1c8e67e81e881182852bc0a *NEWS.md
45d5e5fe3cdc61af2dced948dc3125ef *R/CoNGAfy.R
b838058107b5bc4fe79e063253b08a44 *R/Ibex-package.R
abfe8416a604221631daacf25c7def4d *R/Ibex_matrix.R
df5219e332e2e35db83c17174eeae834 *R/basiliskEnv.R
9d08073d265cf6d1b6335a4e62535308 *R/combineExpandedBCR.R
031b15dc4cd73383aba229688cf4713c *R/global.R
fd3857dc38d81d41b761a58bcf13d5b9 *R/ibex_example.R
652de2de7c1cbbf4318ddfb924685dfe *R/ibex_vdj.R
b6ef9983b92f870427203d49c0704f38 *R/runIbex.R
6acbceab791f89b00fbc30e5cff4d1c3 *R/utils.R
5c5e9eae327022df614ba034d5497d81 *R/zzz.R
cd57c1248ba935e585e749e37020b106 *README.md
c87754fa4a2e92d373ea7ae6eb3a9b0d *build/vignette.rds
1b0337103581daea9e45318e21ecbf84 *configure
e71ce539a11daebaaf3f674ef2f35c20 *configure.win
2e00da46276927a0e4f62d60fc5f08bf *data/ibex_example.rda
8a504926a5d8b1b016d8d4e0f6cb570b *data/ibex_vdj.rda
efc5f71aaeb26e92427a7d970ddccaae *inst/WORDLIST
e04cba46568ac15673211008cad5e68b *inst/doc/Ibex.R
addfc3cbbf7f3a3b39f3256b28b74323 *inst/doc/Ibex.Rmd
29e832f3825f5a16ed9137b6ab1a3ef8 *inst/doc/Ibex.html
eaf04dbcb1d5000277269f15b6900b64 *inst/extdata/metadata.csv
e5cf1c21e2fda913098a266c61d6aa99 *inst/scripts/ibex-example-processing.R
6a2b9b761a74eeef5fecb0a18383aead *inst/scripts/make-data.R
af0ed081abc38b439e0cd5789dedb6b5 *inst/scripts/make-metadata.R
224931f1c52a2672743a458707b0f857 *man/CoNGAfy.Rd
48bee25a7bb260a669dbdabfb2d33b5b *man/Ibex-package.Rd
2f629f0bd9f1f1795d260527c4cd2b05 *man/Ibex_matrix.Rd
b25acca134779b3aceb4747ecbaee071 *man/combineExpandedBCR.Rd
01143a6d38bfb4cae4d68926b7ac2c91 *man/filter.cells.Rd
889f17c53bb34ba7ae3962ec497c4d3c *man/ibex_example.Rd
60ea7e2486176e1823d5230a6fdbada2 *man/ibex_vdj.Rd
92fbe612d4dc17ea3e7aab34123d52d5 *man/runIbex.Rd
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
a95a9ae168c801f8937bd0240291f9e0 *tests/testthat.R
135d7898dd244bec9855d8f56d1f665d *tests/testthat/helper-testingFunctions.R
655aef59289ac9fadff56c8f6c15e11e *tests/testthat/test-CoNGAfy.R
668ac81d31589ff97284526a8199c6fa *tests/testthat/test-Ibex_matrix.R
a19ecf15ad15a85697d6ee2fec2fe432 *tests/testthat/test-combineExpandedBCR.R
59470ae4a838de003dcaa7aa268774c2 *tests/testthat/test-runIbex.R
e5d06547256060edfe83f5bee625c06a *tests/testthat/testdata/CoNGAfy/CoNGAfy_counts.rds
743b9d6cc778c6de7732062b5a14322e *tests/testthat/testdata/CoNGAfy/CoNGAfy_mean_counts.rds
133e3082fd2c3f504ba57b385d208fff *tests/testthat/testdata/CoNGAfy/CoNGAfy_mean_meta.data.rds
8eb40bece0fdacc2f5d10cd3d1d20edc *tests/testthat/testdata/CoNGAfy/CoNGAfy_meta.data.rds
bfb188989784a24a0c1145891f5ab848 *tests/testthat/testdata/quietBCRgenes/quietBCRgenes_feature.vector.rds
8cc40d4d218da53104d8c95acb109af3 *tests/testthat/testdata/runIbex/ibex.matrix_Heavy_VAE_AF.rds
be5f001f8e219add40fca49e48f0ae8f *tests/testthat/testdata/runIbex/ibex.matrix_Light_AE_OHE.rds
e8f4c324fd5d21f642a9a5056a869316 *tests/testthat/testdata/runIbex/runIbex_Heavy_VAE_AF_reduction.rds
c86eda1db83fd99de92568c293f57a3e *tests/testthat/testdata/runIbex/runIbex_Heavy_VAE_OHE_reduction.rds
3256d0f35783717077bd7f155927c26f *tests/testthat/testdata/runIbex/runIbex_Heavy_geometric_reduction.rds
4e5cd8f43722bebb58c118fef6de0122 *tests/testthat/testdata/runIbex/runIbex_Light_AE_KF_reduction.rds
addfc3cbbf7f3a3b39f3256b28b74323 *vignettes/Ibex.Rmd
