665844e9fc0ceda8b8ff64fbd852327d *DESCRIPTION
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
89c8862f6366e0ebba3f0cb568bdfdba *NAMESPACE
50e4fb3a1099225a7e9ed9bc0051697a *NEWS.md
8ef1e8e0f87e20ffe99fe8fbce769604 *R/data.r
8e2a28a8547461c8b9be6758c0db43de *R/main.r
7ff9268d60cfc40636d4392cc95162ff *R/plotting.r
df6cc46bc7fae1a55b713f3d5065b35a *R/scECODA-package.R
694e3d749bbb6b0d712a0de37e7c4fc7 *README.md
545b899878d9c3467d2d0c6faf140564 *build/vignette.rds
09781ff856678970ef3f280ccba8e04e *data-raw/Create_readme_figure.rmd
0534f2bd2b5fdeecebcbd1e9e81c916b *data/example_data.rda
9ec1870505849fba881d8a8b0d451142 *inst/doc/scECODA.R
e8dc01e28758221b5313eed3c5cae6ab *inst/doc/scECODA.html
924a9d9fcc2da10f40b3d6e6b1b87786 *inst/doc/scECODA.rmd
cf1c42c55f1334fd36c3ef631174dc50 *man/calc_anosim.Rd
306be8322173b82a9d2d139e9ec3d438 *man/calc_ari.Rd
53711076419285f4874ffe6ad5256626 *man/calc_clr.Rd
09e008323913bd307229ed647db0290d *man/calc_freq.Rd
69d3a192ca6c1dea82270921d0703bab *man/calc_modularity.Rd
03fa35653097bbbc33d2c8f2c1840ffd *man/calc_sil.Rd
360ef5841ecd898f7c909adc45d5c15c *man/calculate_pseudobulk.Rd
930330bbd27e209cbdb3dec16052da93 *man/compute_KNN_from_dist.Rd
6f8a48a1daf65d7107e33c9fc7d38b93 *man/compute_snn_graph.Rd
f0f5147980b3f4c3c65d0bbc35e51593 *man/create_long_data.Rd
52c9cfc7703e1dec9303cb4b179b4e7a *man/deseq2_normalize.Rd
0318b1bc87a604de0285a6ac621c2b9e *man/ecoda.Rd
00d8d3be6b6e0db9cf07277c37084d1e *man/ecoda_helper.Rd
daa6fd1ce7f62c64479a98bc2697642a *man/example_data.Rd
1b0be5519e0d7f7f6b4ee7fc1fb9b490 *man/figures/GongSharma.png
1f6a8fb6569d0d9dc25282369a357b10 *man/find_hvcs.Rd
3bcffcb4982d36d78605273ec0a65401 *man/get_celltype_counts.Rd
70e00349dca503e09b19a32b5944628e *man/get_celltype_variances.Rd
ca95469801728fc4a36e2c0b496a664f *man/get_ecoda_assay.Rd
93412e0e9c81ca079abc8bc1467114af *man/get_hvcs.Rd
b97818f99cb1feaabdd543fd9f3af361 *man/get_sample_metadata.Rd
62d3ea6fe1578bc69d96c0cbace976d9 *man/plot_barplot.Rd
3071ba5ba10dc3584063f686bdf01dfd *man/plot_boxplot.Rd
d62d48b1d60092f79ee9c18d4ddb7016 *man/plot_corr.Rd
474b999ec1741f4cc966bb095fd9ba90 *man/plot_heatmap.Rd
23dd5691c983b3a3b7f6636eff4100ae *man/plot_pca.Rd
d6a8161c11ed4171156fd5183016b10d *man/plot_pca3d.Rd
015fb4eb9dbabc629c4ec6d3ae3cb304 *man/plot_varmean.Rd
58d7ec28bbbd9dc41bb1cfee078e2b4f *man/replace_zeros.Rd
1cf357ea9165e8ea97f38fd211b569b3 *man/scECODA-package.Rd
c1948363d4b8197e20bbd550878fc404 *tests/testthat.R
64f96acfed1b0f1f1a72af63103fba1c *tests/testthat/test_constructor.r
c1baa8f1dbece7ffbd130aecfb144397 *tests/testthat/test_data_extraction.R
f6e847ba9cef6a19f2721da0c013cc09 *tests/testthat/test_hvc.R
8808d6713bc3020250d1c72d28f5e414 *tests/testthat/test_metrics.R
2acb453e7ee4b00a843c711e032771e8 *tests/testthat/test_plotting.R
499a65a384a62b8d48f973403dd861a7 *tests/testthat/test_pseudobulk.R
5818de80c66590080aa14ac37ff5e3d7 *tests/testthat/test_transformations.R
4467997f25fe65ff6576fae6d7f16694 *vignettes/references.bib
924a9d9fcc2da10f40b3d6e6b1b87786 *vignettes/scECODA.rmd
