# StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles

## Documentation for package ‘StatescopeR’ version 0.99.31

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

autogenes | Python environments
barplot_stateloadings | Create a barplot of top stateloadings
BLADE_deconvolution | Run BLADE deconvolution
create_signature | Create scRNAseq Signature
fraction_eval | Create a barplot of TRUE vs estimated cfs
fraction_heatmap | Create a heatmap of the estimated fractions
gather_true_fractions | Gather true fractions
Refinement | Run Refinement
select_genes | Select genes using AutoGeneS
StateDiscovery | Run StateDiscovery