Package: miRSM
Type: Package
Title: Inferring miRNA sponge modules in heterogeneous data
Version: 2.7.0
Authors@R: 
    person(given = "Junpeng", 
           family = "Zhang", 
           role=c("aut", "cre"), 
           email = "zjp@dali.edu.cn")
Description: The package aims to identify miRNA sponge or ceRNA modules
        in heterogeneous data. It provides several functions to study
        miRNA sponge modules at single-sample and multi-sample levels,
        including popular methods for inferring gene modules (candidate
        miRNA sponge or ceRNA modules), and two functions to identify
        miRNA sponge modules at single-sample and multi-sample levels,
        as well as several functions to conduct modular analysis of
        miRNA sponge modules.
Depends: R (>= 4.4.0)
License: GPL-3
URL: https://github.com/zhangjunpeng411/miRSM
Encoding: UTF-8
biocViews: GeneExpression, BiomedicalInformatics, Clustering,
        GeneSetEnrichment, Microarray, Software, GeneRegulation,
        GeneTarget
RoxygenNote: 7.3.2
Imports: WGCNA, flashClust, dynamicTreeCut, GFA, igraph, RColorBrewer,
        grid, MCL, fabia, NMF, biclust, iBBiG, BicARE, isa2, methods,
        rJava, BiBitR, rqubic, Biobase, PMA, stats, dbscan, mclust,
        SOMbrero, ppclust, Rcpp, utils, SummarizedExperiment, GSEABase,
        org.Hs.eg.db, clusterProfiler, ReactomePA, DOSE,
        MatrixCorrelation, energy
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
BugReports: https://github.com/zhangjunpeng411/miRSM/issues
Config/pak/sysreqs: libabsl-dev libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libgdal-dev gdal-bin libgeos-dev libglpk-dev
        make libgsl0-dev default-jdk libicu-dev libjpeg-dev libpng-dev
        libxml2-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev libnode-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:47:11 UTC
RemoteUrl: https://github.com/bioc/miRSM
RemoteRef: HEAD
RemoteSha: 64db36b0a3096a48e8db80fb256ad04b8fec8db6
NeedsCompilation: yes
Packaged: 2025-10-30 07:33:59 UTC; root
Author: Junpeng Zhang [aut, cre]
Maintainer: Junpeng Zhang <zjp@dali.edu.cn>
Built: R 4.6.0; x86_64-w64-mingw32; 2025-10-30 07:38:37 UTC; windows
Archs: x64
