Package: plyinteractions
Title: Extending tidy verbs to genomic interactions
Description: Operate on `GInteractions` objects as tabular data using
        `dplyr`-like verbs. The functions and methods in
        `plyinteractions` provide a grammatical approach to manipulate
        `GInteractions`, to facilitate their integration in genomic
        analysis workflows.
Version: 1.9.0
Date: 2025-07-22
Authors@R: 
    c(person("Jacques", "Serizay", , "jacquesserizay@gmail.com",
        role = c("aut", "cre")
    ))
License: Artistic-2.0
URL: https://github.com/js2264/plyinteractions
BugReports: https://github.com/js2264/plyinteractions/issues
biocViews: Software, Infrastructure
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Imports: InteractionSet, Seqinfo, BiocGenerics, GenomicRanges,
        plyranges, IRanges, S4Vectors, rlang, dplyr, tibble,
        tidyselect, methods, utils
Suggests: tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings,
        BiocParallel, GenomeInfoDb, scales, HiContactsData,
        rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo,
        testthat (>= 3.0.0), RefManageR
Config/testthat/edition: 3
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Collate: 'AllGenerics.R' 'AllClasses.R' 'add_pairdist.R' 'anchor.R'
        'annotate.R' 'arrange.R' 'count-overlaps.R' 'count.R' 'data.R'
        'export.R' 'filter-overlaps.R' 'filter.R' 'find-overlaps.R'
        'flank.R' 'ginteractions-construct.R' 'ginteractions-env.R'
        'ginteractions-getters.R' 'ginteractions-scoping.R'
        'ginteractions-setters.R' 'tbl_vars.R' 'group_data.R'
        'group_by.R' 'internals.R' 'join-overlap-left.R'
        'methods-AnchoredPinnedGInteractions.R'
        'methods-DelegatingGInteractions.R'
        'methods-GroupedGInteractions.R'
        'methods-PinnedGInteractions.R' 'methods-show.R' 'mutate.R'
        'pair-granges.R' 'pin.R' 'plyinteractions.R'
        'reexports-dplyr.R' 'reexports-plyranges.R' 'reexports.R'
        'rename.R' 'replace-anchors.R' 'select.R' 'shift.R' 'slice.R'
        'stretch.R' 'summarize.R'
LazyData: false
Depends: R (>= 4.3.0)
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:25:39 UTC
RemoteUrl: https://github.com/bioc/plyinteractions
RemoteRef: HEAD
RemoteSha: 172a96aed725fa822d4db84419d1728fa2d83015
NeedsCompilation: no
Packaged: 2025-10-30 08:41:25 UTC; root
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Built: R 4.6.0; ; 2025-10-30 08:45:47 UTC; windows
