metabom8
This is the development version of metabom8; to use it, please install the devel version of Bioconductor.
A High-Performance R Package for Metabolomics Modeling and Analysis
Bioconductor version: Development (3.23)
Tools for 1D NMR metabolomics workflows, including import and preprocessing of Bruker experiments, multivariate modeling (PCA, PLS, OPLS) and model analytics and validation (y-permutations, cv-anova). Performance-critical routines are implemented in C++ and use the Armadillo and Eigen linear algebra libraries to improve runtime.
Author: Torben Kimhofer [aut, cre]
Maintainer: Torben Kimhofer <tkimhofer at gmail.com>
citation("metabom8")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("metabom8")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metabom8")| Getting Started | HTML | R Script |
| Reference Manual |
Details
| biocViews | Alignment, Cheminformatics, DataImport, Metabolomics, Preprocessing, Software, WorkflowStep |
| Version | 0.99.10 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.6.0) |
| Imports | abind, colorRamps, ellipse, fs, ggplot2, ggrepel, graphics, methods, parallel, pcaMethods, plotly, pROC, progress, ptw, Rcpp (>= 1.0.4.6), reshape2, rlang, scales, signal, stats, utils |
| System Requirements | |
| URL | https://tkimhofer.github.io/metabom8/ |
| Bug Reports | https://github.com/tkimhofer/metabom8/issues |
See More
| Suggests | BiocStyle, dplyr, DT, ExperimentHub, htmlTable, knitr, rmarkdown, testthat |
| Linking To | Rcpp, RcppArmadillo, RcppEigen |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | metabom8_0.99.10.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | metabom8_0.99.10.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metabom8 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metabom8 |
| Bioc Package Browser | https://code.bioconductor.org/browse/metabom8/ |
| Package Short Url | https://bioconductor.org/packages/metabom8/ |
| Package Downloads Report | Download Stats |