splicelogic
This is the development version of splicelogic; to use it, please install the devel version of Bioconductor.
splicelogic: differential transcripts to splice events
Bioconductor version: Development (3.23)
Translate differential transcript usage results into discrete splice events.
Author: Beatriz Campillo [aut, cre]
, Michael Love [aut]
, NIH NHGRI [fnd], Wellcome Trust [fnd]
Maintainer: Beatriz Campillo <beatrizcampillo29 at gmail.com>
citation("splicelogic")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("splicelogic")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("splicelogic")| Introduction to `splicelogic` | HTML | R Script |
| Reference Manual |
Details
| biocViews | AlternativeSplicing, Annotation, DifferentialSplicing, FunctionalGenomics, LongRead, RNASeq, Software, Transcriptomics |
| Version | 0.99.2 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | dplyr, magrittr, GenomicRanges, plyranges, tibble, IRanges, S4Vectors, rlang, methods, stats |
| System Requirements | |
| URL | https://github.com/thelovelab/splicelogic https://thelovelab.github.io/splicelogic |
| Bug Reports | https://github.com/thelovelab/splicelogic/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0), readr, wiggleplotr, GenomicFeatures, AnnotationHub, ggplot2, AnnotationDbi, Seqinfo |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | splicelogic_0.99.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | splicelogic_0.99.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/splicelogic |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/splicelogic |
| Bioc Package Browser | https://code.bioconductor.org/browse/splicelogic/ |
| Package Short Url | https://bioconductor.org/packages/splicelogic/ |
| Package Downloads Report | Download Stats |