ALL {GOstats} | R Documentation

## Acute Lymphoblastic Leukemia Data from the Ritz Laboratory

### Description

The data consist of microarrays from 128 different individuals with acute lymphoblastic leukemia (ALL). A number of additional covariates are available. The data have been normalized (using gcrma) and it is the jointly normalized data that are available here. The data are presented in the form of an `exprSet` object.

### Usage

    data(ALL)

### Format

The different covariates are:

`cod`
  The patient IDs.
`diagnosis`
  The date of diagnosis.
`sex`
  The sex of the patient, coded as `M` and `F`.
`age`
  The age of the patient in years.
`BT`
  The type and stage of the disease; `B` indicates B-cell ALL while a `T` indicates T-cell ALL.
`remission`
  A factor with two levels, either `CR` indicate that remission was achieved or `REF` indicating that the patient was refractory and remission was not achieved.
`CR`
  As above, but with extra information on whether the patient died while remission was being attempted.
`date.cr`
  The date on which remission was achieved.
`t(4;11)`
  A logical vector indicating whether a t(4;11) translocation was detected.
`t(9;22)`
  A logical vector indicating whether a t(9;22) translocation was detected.
`cyto.normal`
  A logical vector indicating whether the cytogenetics were normal.
`citog`
  A vector indicating the various cytogenetic abnormalities that were detected.
`mol.biol`
  The assigned molecular biology of the cancer (mainly for those with B-cell ALL), BCR/ABL, ALL/AF4, E2APBX etc.
`fusion protein`
  For those with BCR/ABL which of the fusion proteins was detected, `p190`, `p190/p210`, `p210`.
`mdr`
  The patients response to multidrug resistance, either `NEG`, or `POS`.
`kinet`
  Not sure what this is.
`ccr`
  What does it really mean
`relapse`
  Definition
`transplant`
  Did the patient receive a bone marrow transplant or not.
`f.u`
  List the possible values and what they mean "BMT / DEATH IN CR" "rel" "rel" "rel " ...
date last seen
  Date the patient was last seen.

### Details

Put some detail here

### Source

Put a reference here

### Examples

    data(ALL)

[Package GOstats version 1.1.1 Index]