# Tools for manipulating GO and microarrays.

## Documentation for package `GOstats' version 1.1.1

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

ALL | Acute Lymphoblastic Leukemia Data from the Ritz Laboratory
Bdists | Distance matrices for the BCR/ABL and NEG subgroups.
combGOGraph | Defunct Functions in GOstats Package
compCorrGraph | A function to compute a correlation based graph from Gene Expression Data
compGdist | A function to compute the distance between pairs of nodes in a graph.
dropECode | Drop GO labels for specified Evidence Codes
enumPairs | Triad Functions
getEvidence | Get the Evidence codes for a set of GO terms.
getGOChildren | Functions to Access GO data.
getGOOntology | Functions to Access GO data.
getGOParents | Functions to Access GO data.
getGOTerm | Functions to Access GO data.
getOntology | Get GO terms for a specified ontology
GOGraph | Construct the GO graph given a set of leaves.
GOHyperG | Hypergeometric Tests for GO
GOLeaves | Identify the leaves in a GO Graph
GOstats-defunct | Defunct Functions in GOstats Package
hasGOannote | Check for GO annotation
idx2dimnames | Index to Dimnames
isTriad | Triad Functions
makeGOGraph | Construct a GO Graph
Ndists | Distance matrices for the BCR/ABL and NEG subgroups.
notConn | Find genes that are not connected to the others.
oneGOGraph | Construct the GO graph given a set of leaves.
reduce2Degreek | Triad Functions
shortestPath | Shortest Path Analysis
simLL | Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs.
simLP | Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs.
simUI | Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs.
triad | Triad Functions
triadCensus | Triad Functions